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Validation and Analysis of Protein Tertiary Structures

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Upload of single or multiple PDB files (up to 30):

Structure: Theoretical Experimental

Chain: All First Chain:

Model: All Best First

Include non canonic amino acids?

Output options

Standard outputs

Choose the output files you want to be generated

Sequence logo
Texts
Tabular amino acid overview

Additional outputs

Choosing these options leads to significantly more complex computations, prolonged computational time and results in a very high volume of data.

Graphics
Details

Desired program options

VAProTS
Assignment

VAProTS
Analysis

VAProTS
Assessment

Please choose at least one of the following analysis tools:

VAProTS - Cis
VAProTS - Amino
VAProTS - Atoms
VAProTS - D-Amino
VAProTS - Charge

VAProTS - Disulfide
VAProTS - Assignment
VAProTS - B-Factors
VAProTS - Gyration
VAProTS - Salt

VAProTS - Protonation
VAProTS - Aromates
VAProTS - Chi1
VAProTS - Pi-Pi
VAProTS - Cation-Pi

Please choose at least one of the following assessment or analysis tools:

VAProTS - Analysis
VAProTS - Bonds
VAProTS - Torsion
VAProTS - Sphere
VAProTS - Energy
VAProTS - Secondary

Secondary structure assignment only. Choose your preferred options:

Unfiltered (only one assignment is run over the structure)
Filtered (helices with less than 5 and strands with less than 3 amino acids are excluded)
Detailed (many additional checks are run to improve the assignment. Longer runtime)
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